Gecko [ biogenelab.eu ]

Name	Size	Permission
mergetools	[ DIR ]	drwxr-xr-x
git	1.61 MB	-rwxr-xr-x
git-add	1.61 MB	-rwxr-xr-x
git-add--interactive	36.07 KB	-rwxr-xr-x
git-am	22.74 KB	-rwxr-xr-x
git-annotate	1.61 MB	-rwxr-xr-x
git-apply	1.61 MB	-rwxr-xr-x
git-archive	1.61 MB	-rwxr-xr-x
git-bisect	11.72 KB	-rwxr-xr-x
git-bisect--helper	1.61 MB	-rwxr-xr-x
git-blame	1.61 MB	-rwxr-xr-x
git-branch	1.61 MB	-rwxr-xr-x
git-bundle	1.61 MB	-rwxr-xr-x
git-cat-file	1.61 MB	-rwxr-xr-x
git-check-attr	1.61 MB	-rwxr-xr-x
git-check-ignore	1.61 MB	-rwxr-xr-x
git-check-mailmap	1.61 MB	-rwxr-xr-x
git-check-ref-format	1.61 MB	-rwxr-xr-x
git-checkout	1.61 MB	-rwxr-xr-x
git-checkout-index	1.61 MB	-rwxr-xr-x
git-cherry	1.61 MB	-rwxr-xr-x
git-cherry-pick	1.61 MB	-rwxr-xr-x
git-clean	1.61 MB	-rwxr-xr-x
git-clone	1.61 MB	-rwxr-xr-x
git-column	1.61 MB	-rwxr-xr-x
git-commit	1.61 MB	-rwxr-xr-x
git-commit-tree	1.61 MB	-rwxr-xr-x
git-config	1.61 MB	-rwxr-xr-x
git-count-objects	1.61 MB	-rwxr-xr-x
git-credential	1.61 MB	-rwxr-xr-x
git-credential-cache	791.85 KB	-rwxr-xr-x
git-credential-cache--daemon	800.04 KB	-rwxr-xr-x
git-credential-store	799.85 KB	-rwxr-xr-x
git-daemon	808.35 KB	-rwxr-xr-x
git-describe	1.61 MB	-rwxr-xr-x
git-diff	1.61 MB	-rwxr-xr-x
git-diff-files	1.61 MB	-rwxr-xr-x
git-diff-index	1.61 MB	-rwxr-xr-x
git-diff-tree	1.61 MB	-rwxr-xr-x
git-difftool	13.01 KB	-rwxr-xr-x
git-difftool--helper	1.92 KB	-rwxr-xr-x
git-fast-export	1.61 MB	-rwxr-xr-x
git-fast-import	828.48 KB	-rwxr-xr-x
git-fetch	1.61 MB	-rwxr-xr-x
git-fetch-pack	1.61 MB	-rwxr-xr-x
git-filter-branch	11.46 KB	-rwxr-xr-x
git-fmt-merge-msg	1.61 MB	-rwxr-xr-x
git-for-each-ref	1.61 MB	-rwxr-xr-x
git-format-patch	1.61 MB	-rwxr-xr-x
git-fsck	1.61 MB	-rwxr-xr-x
git-fsck-objects	1.61 MB	-rwxr-xr-x
git-gc	1.61 MB	-rwxr-xr-x
git-get-tar-commit-id	1.61 MB	-rwxr-xr-x
git-grep	1.61 MB	-rwxr-xr-x
git-hash-object	1.61 MB	-rwxr-xr-x
git-help	1.61 MB	-rwxr-xr-x
git-http-backend	800.35 KB	-rwxr-xr-x
git-http-fetch	896.79 KB	-rwxr-xr-x
git-http-push	912.79 KB	-rwxr-xr-x
git-imap-send	812.16 KB	-rwxr-xr-x
git-index-pack	1.61 MB	-rwxr-xr-x
git-init	1.61 MB	-rwxr-xr-x
git-init-db	1.61 MB	-rwxr-xr-x
git-instaweb	18.09 KB	-rwxr-xr-x
git-log	1.61 MB	-rwxr-xr-x
git-ls-files	1.61 MB	-rwxr-xr-x
git-ls-remote	1.61 MB	-rwxr-xr-x
git-ls-tree	1.61 MB	-rwxr-xr-x
git-mailinfo	1.61 MB	-rwxr-xr-x
git-mailsplit	1.61 MB	-rwxr-xr-x
git-merge	1.61 MB	-rwxr-xr-x
git-merge-base	1.61 MB	-rwxr-xr-x
git-merge-file	1.61 MB	-rwxr-xr-x
git-merge-index	1.61 MB	-rwxr-xr-x
git-merge-octopus	2.16 KB	-rwxr-xr-x
git-merge-one-file	3.4 KB	-rwxr-xr-x
git-merge-ours	1.61 MB	-rwxr-xr-x
git-merge-recursive	1.61 MB	-rwxr-xr-x
git-merge-resolve	944 B	-rwxr-xr-x
git-merge-subtree	1.61 MB	-rwxr-xr-x
git-merge-tree	1.61 MB	-rwxr-xr-x
git-mergetool	8.44 KB	-rwxr-xr-x
git-mergetool--lib	7.38 KB	-rw-r--r--
git-mktag	1.61 MB	-rwxr-xr-x
git-mktree	1.61 MB	-rwxr-xr-x
git-mv	1.61 MB	-rwxr-xr-x
git-name-rev	1.61 MB	-rwxr-xr-x
git-notes	1.61 MB	-rwxr-xr-x
git-pack-objects	1.61 MB	-rwxr-xr-x
git-pack-redundant	1.61 MB	-rwxr-xr-x
git-pack-refs	1.61 MB	-rwxr-xr-x
git-parse-remote	2.26 KB	-rw-r--r--
git-patch-id	1.61 MB	-rwxr-xr-x
git-prune	1.61 MB	-rwxr-xr-x
git-prune-packed	1.61 MB	-rwxr-xr-x
git-pull	8.7 KB	-rwxr-xr-x
git-push	1.61 MB	-rwxr-xr-x
git-quiltimport	3.29 KB	-rwxr-xr-x
git-read-tree	1.61 MB	-rwxr-xr-x
git-rebase	15.66 KB	-rwxr-xr-x
git-rebase--am	2.39 KB	-rw-r--r--
git-rebase--interactive	27.84 KB	-rw-r--r--
git-rebase--merge	3.72 KB	-rw-r--r--
git-receive-pack	1.61 MB	-rwxr-xr-x
git-reflog	1.61 MB	-rwxr-xr-x
git-relink	4.1 KB	-rwxr-xr-x
git-remote	1.61 MB	-rwxr-xr-x
git-remote-ext	1.61 MB	-rwxr-xr-x
git-remote-fd	1.61 MB	-rwxr-xr-x
git-remote-ftp	904.73 KB	-rwxr-xr-x
git-remote-ftps	904.73 KB	-rwxr-xr-x
git-remote-http	904.73 KB	-rwxr-xr-x
git-remote-https	904.73 KB	-rwxr-xr-x
git-remote-testsvn	812.05 KB	-rwxr-xr-x
git-repack	1.61 MB	-rwxr-xr-x
git-replace	1.61 MB	-rwxr-xr-x
git-request-pull	3.77 KB	-rwxr-xr-x
git-rerere	1.61 MB	-rwxr-xr-x
git-reset	1.61 MB	-rwxr-xr-x
git-rev-list	1.61 MB	-rwxr-xr-x
git-rev-parse	1.61 MB	-rwxr-xr-x
git-revert	1.61 MB	-rwxr-xr-x
git-rm	1.61 MB	-rwxr-xr-x
git-send-pack	1.61 MB	-rwxr-xr-x
git-sh-i18n	1.93 KB	-rw-r--r--
git-sh-i18n--envsubst	787.85 KB	-rwxr-xr-x
git-sh-prompt	15.04 KB	-rw-r--r--
git-sh-setup	8.06 KB	-rw-r--r--
git-shell	792.1 KB	-rwxr-xr-x
git-shortlog	1.61 MB	-rwxr-xr-x
git-show	1.61 MB	-rwxr-xr-x
git-show-branch	1.61 MB	-rwxr-xr-x
git-show-index	787.91 KB	-rwxr-xr-x
git-show-ref	1.61 MB	-rwxr-xr-x
git-stage	1.61 MB	-rwxr-xr-x
git-stash	13.27 KB	-rwxr-xr-x
git-status	1.61 MB	-rwxr-xr-x
git-stripspace	1.61 MB	-rwxr-xr-x
git-submodule	33.17 KB	-rwxr-xr-x
git-submodule--helper	1.61 MB	-rwxr-xr-x
git-subtree	15.31 KB	-rwxr-xr-x
git-symbolic-ref	1.61 MB	-rwxr-xr-x
git-tag	1.61 MB	-rwxr-xr-x
git-unpack-file	1.61 MB	-rwxr-xr-x
git-unpack-objects	1.61 MB	-rwxr-xr-x
git-update-index	1.61 MB	-rwxr-xr-x
git-update-ref	1.61 MB	-rwxr-xr-x
git-update-server-info	1.61 MB	-rwxr-xr-x
git-upload-archive	1.61 MB	-rwxr-xr-x
git-upload-pack	868.16 KB	-rwxr-xr-x
git-var	1.61 MB	-rwxr-xr-x
git-verify-commit	1.61 MB	-rwxr-xr-x
git-verify-pack	1.61 MB	-rwxr-xr-x
git-verify-tag	1.61 MB	-rwxr-xr-x
git-web--browse	4.3 KB	-rwxr-xr-x
git-whatchanged	1.61 MB	-rwxr-xr-x
git-write-tree	1.61 MB	-rwxr-xr-x

Code Editor : git-sh-setup

# This shell scriplet is meant to be included by other shell scripts
# to set up some variables pointing at the normal git directories and
# a few helper shell functions.

# Having this variable in your environment would break scripts because
# you would cause "cd" to be taken to unexpected places.  If you
# like CDPATH, define it for your interactive shell sessions without
# exporting it.
# But we protect ourselves from such a user mistake nevertheless.
unset CDPATH

# Similarly for IFS, but some shells (e.g. FreeBSD 7.2) are buggy and
# do not equate an unset IFS with IFS with the default, so here is
# an explicit SP HT LF.
IFS=' 	
'

git_broken_path_fix () {
	case ":$PATH:" in
	*:$1:*) : ok ;;
	*)
		PATH=$(
			SANE_TOOL_PATH="$1"
			IFS=: path= sep=
			set x $PATH
			shift
			for elem
			do
				case "$SANE_TOOL_PATH:$elem" in
				(?*:/bin | ?*:/usr/bin)
					path="$path$sep$SANE_TOOL_PATH"
					sep=:
					SANE_TOOL_PATH=
				esac
				path="$path$sep$elem"
				sep=:
			done
			echo "$path"
		)
		;;
	esac
}

die () {
	die_with_status 1 "$@"
}

die_with_status () {
	status=$1
	shift
	printf >&2 '%s\n' "$*"
	exit "$status"
}

GIT_QUIET=

say () {
	if test -z "$GIT_QUIET"
	then
		printf '%s\n' "$*"
	fi
}

if test -n "$OPTIONS_SPEC"; then
	usage() {
		"$0" -h
		exit 1
	}

parseopt_extra=
	[ -n "$OPTIONS_KEEPDASHDASH" ] &&
		parseopt_extra="--keep-dashdash"
	[ -n "$OPTIONS_STUCKLONG" ] &&
		parseopt_extra="$parseopt_extra --stuck-long"

eval "$(
		echo "$OPTIONS_SPEC" |
			git rev-parse --parseopt $parseopt_extra -- "$@" ||
		echo exit $?
	)"
else
	dashless=$(basename "$0" | sed -e 's/-/ /')
	usage() {
		die "usage: $dashless $USAGE"
	}

if [ -z "$LONG_USAGE" ]
	then
		LONG_USAGE="usage: $dashless $USAGE"
	else
		LONG_USAGE="usage: $dashless $USAGE

$LONG_USAGE"
	fi

case "$1" in
		-h)
		echo "$LONG_USAGE"
		exit
	esac
fi

# Set the name of the end-user facing command in the reflog when the
# script may update refs.  When GIT_REFLOG_ACTION is already set, this
# will not overwrite it, so that a scripted Porcelain (e.g. "git
# rebase") can set it to its own name (e.g. "rebase") and then call
# another scripted Porcelain (e.g. "git am") and a call to this
# function in the latter will keep the name of the end-user facing
# program (e.g. "rebase") in GIT_REFLOG_ACTION, ensuring whatever it
# does will be record as actions done as part of the end-user facing
# operation (e.g. "rebase").
#
# NOTE NOTE NOTE: consequently, after assigning a specific message to
# GIT_REFLOG_ACTION when calling a "git" command to record a custom
# reflog message, do not leave that custom value in GIT_REFLOG_ACTION,
# after you are done.  Other callers of "git" commands that rely on
# writing the default "program name" in reflog expect the variable to
# contain the value set by this function.
#
# To use a custom reflog message, do either one of these three:
#
# (a) use a single-shot export form:
#     GIT_REFLOG_ACTION="$GIT_REFLOG_ACTION: preparing frotz" \
#         git command-that-updates-a-ref
#
# (b) save the original away and restore:
#     SAVED_ACTION=$GIT_REFLOG_ACTION
#     GIT_REFLOG_ACTION="$GIT_REFLOG_ACTION: preparing frotz"
#     git command-that-updates-a-ref
#     GIT_REFLOG_ACITON=$SAVED_ACTION
#
# (c) assign the variable in a subshell:
#     (
#         GIT_REFLOG_ACTION="$GIT_REFLOG_ACTION: preparing frotz"
#         git command-that-updates-a-ref
#     )
set_reflog_action() {
	if [ -z "${GIT_REFLOG_ACTION:+set}" ]
	then
		GIT_REFLOG_ACTION="$*"
		export GIT_REFLOG_ACTION
	fi
}

git_editor() {
	if test -z "${GIT_EDITOR:+set}"
	then
		GIT_EDITOR="$(git var GIT_EDITOR)" || return $?
	fi

eval "$GIT_EDITOR" '"$@"'
}

git_pager() {
	if test -t 1
	then
		GIT_PAGER=$(git var GIT_PAGER)
	else
		GIT_PAGER=cat
	fi
	: ${LESS=-FRX}
	: ${LV=-c}
	export LESS LV

eval "$GIT_PAGER" '"$@"'
}

sane_grep () {
	GREP_OPTIONS= LC_ALL=C grep "$@"
}

sane_egrep () {
	GREP_OPTIONS= LC_ALL=C egrep "$@"
}

is_bare_repository () {
	git rev-parse --is-bare-repository
}

cd_to_toplevel () {
	cdup=$(git rev-parse --show-toplevel) &&
	cd "$cdup" || {
		echo >&2 "Cannot chdir to $cdup, the toplevel of the working tree"
		exit 1
	}
}

require_work_tree_exists () {
	if test "z$(git rev-parse --is-bare-repository)" != zfalse
	then
		die "fatal: $0 cannot be used without a working tree."
	fi
}

require_work_tree () {
	test "$(git rev-parse --is-inside-work-tree 2>/dev/null)" = true ||
	die "fatal: $0 cannot be used without a working tree."
}

require_clean_work_tree () {
	git rev-parse --verify HEAD >/dev/null || exit 1
	git update-index -q --ignore-submodules --refresh
	err=0

if ! git diff-files --quiet --ignore-submodules
	then
		echo >&2 "Cannot $1: You have unstaged changes."
		err=1
	fi

if ! git diff-index --cached --quiet --ignore-submodules HEAD --
	then
		if [ $err = 0 ]
		then
		    echo >&2 "Cannot $1: Your index contains uncommitted changes."
		else
		    echo >&2 "Additionally, your index contains uncommitted changes."
		fi
		err=1
	fi

if [ $err = 1 ]
	then
		test -n "$2" && echo >&2 "$2"
		exit 1
	fi
}

# Generate a sed script to parse identities from a commit.
#
# Reads the commit from stdin, which should be in raw format (e.g., from
# cat-file or "--pretty=raw").
#
# The first argument specifies the ident line to parse (e.g., "author"), and
# the second specifies the environment variable to put it in (e.g., "AUTHOR"
# for "GIT_AUTHOR_*"). Multiple pairs can be given to parse author and
# committer.
pick_ident_script () {
	while test $# -gt 0
	do
		lid=$1; shift
		uid=$1; shift
		printf '%s' "
		/^$lid /{
			s/'/'\\\\''/g
			h
			s/^$lid "'$[^<]*$ <[^>]*> .*$/\1/'"
			s/.*/GIT_${uid}_NAME='&'/p

g
			s/^$lid "'[^<]* <$[^>]*$> .*$/\1/'"
			s/.*/GIT_${uid}_EMAIL='&'/p

g
			s/^$lid "'[^<]* <[^>]*> $.*$$/@\1/'"
			s/.*/GIT_${uid}_DATE='&'/p
		}
		"
	done
	echo '/^$/q'
}

# Create a pick-script as above and feed it to sed. Stdout is suitable for
# feeding to eval.
parse_ident_from_commit () {
	LANG=C LC_ALL=C sed -ne "$(pick_ident_script "$@")"
}

# Parse the author from a commit given as an argument. Stdout is suitable for
# feeding to eval to set the usual GIT_* ident variables.
get_author_ident_from_commit () {
	encoding=$(git config i18n.commitencoding || echo UTF-8)
	git show -s --pretty=raw --encoding="$encoding" "$1" -- |
	parse_ident_from_commit author AUTHOR
}

# Clear repo-local GIT_* environment variables. Useful when switching to
# another repository (e.g. when entering a submodule). See also the env
# list in git_connect()
clear_local_git_env() {
	unset $(git rev-parse --local-env-vars)
}

# Generate a virtual base file for a two-file merge. Uses git apply to
# remove lines from $1 that are not in $2, leaving only common lines.
create_virtual_base() {
	sz0=$(wc -c <"$1")
	diff -u -La/"$1" -Lb/"$1" "$1" "$2" | git apply --no-add
	sz1=$(wc -c <"$1")

# If we do not have enough common material, it is not
	# worth trying two-file merge using common subsections.
	expr $sz0 \< $sz1 \* 2 >/dev/null || : >"$1"
}

# Platform specific tweaks to work around some commands
case $(uname -s) in
*MINGW*)
	# Windows has its own (incompatible) sort and find
	sort () {
		/usr/bin/sort "$@"
	}
	find () {
		/usr/bin/find "$@"
	}
	# git sees Windows-style pwd
	pwd () {
		builtin pwd -W
	}
	is_absolute_path () {
		case "$1" in
		[/\\]* | [A-Za-z]:*)
			return 0 ;;
		esac
		return 1
	}
	;;
*)
	is_absolute_path () {
		case "$1" in
		/*)
			return 0 ;;
		esac
		return 1
	}
esac

# Make sure we are in a valid repository of a vintage we understand,
# if we require to be in a git repository.
if test -z "$NONGIT_OK"
then
	GIT_DIR=$(git rev-parse --git-dir) || exit
	if [ -z "$SUBDIRECTORY_OK" ]
	then
		test -z "$(git rev-parse --show-cdup)" || {
			exit=$?
			echo >&2 "You need to run this command from the toplevel of the working tree."
			exit $exit
		}
	fi
	test -n "$GIT_DIR" && GIT_DIR=$(cd "$GIT_DIR" && pwd) || {
		echo >&2 "Unable to determine absolute path of git directory"
		exit 1
	}
	: ${GIT_OBJECT_DIRECTORY="$GIT_DIR/objects"}
fi

peel_committish () {
	case "$1" in
	:/*)
		peeltmp=$(git rev-parse --verify "$1") &&
		git rev-parse --verify "${peeltmp}^0"
		;;
	*)
		git rev-parse --verify "${1}^0"
		;;
	esac
}

${this.title}

Code Editor : git-sh-setup